Documentation

AlignAIR Documentation

Find everything you need to install, use, and understand AlignAIR. Start by selecting a section below.

🚀 New to AlignAIR?

Get up and running in under 10 minutes with our quick start guide. No complex setup required!

Quick Command:

docker pull thomask90/alignair:latest docker run -it --rm \\ -v ~/data:/data \\ thomask90/alignair:latest

Step-by-step guide to install AlignAIR using Docker or build from source manually. Includes system requirements and troubleshooting.

Learn how to run AlignAIR with different parameters, configure thresholds, and optimize performance for your datasets.

Real-world examples with sample data, commands, and expected outputs. From basic analysis to advanced workflows.

Deep dive into the algorithms, neural network architecture, training pipeline, and theoretical insights behind AlignAIR.

Common questions, troubleshooting guides, and community support. Get quick answers to installation, usage, and technical questions.

Legal information, licensing terms, data privacy policies, and usage rights for AlignAIR and documentation.

Complete parameter reference, input/output formats, and integration guides for programmatic usage and workflows.

Get AlignAIR running in minutes with our Docker installation guide.

Learn how to configure thresholds and optimize for your data.

Understand the neural network design and training process.

Join the AlignAIR community, get help, and contribute to the project.

We're constantly improving our documentation. New interactive guides, examples, and troubleshooting content added regularly.